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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Smarca4
wikigenes
PDBj
CellType: Neural progenitor cells
ATCC
MeSH
RIKEN BRC
SRX16983341
GSM6436755: eNPCs, wt, SMARCA4/BRG1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Smarca4
Cell type
Cell type Class
Neural
Cell type
Neural progenitor cells
NA
NA
Attributes by original data submitter
Sample
source_name
primary NPCs
chip antibody
SMARCA4/BRG1, ab110641, abcam
cell type
primary NPCs
genotype
wt
Sequenced DNA Library
library_name
GSM6436755
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Active Motif
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
39750962
Reads aligned (%)
89.7
Duplicates removed (%)
20.7
Number of peaks
8954 (qval < 1E-05)
mm9
Number of total reads
39750962
Reads aligned (%)
89.6
Duplicates removed (%)
20.7
Number of peaks
8934 (qval < 1E-05)
Base call quality data from
DBCLS SRA